species:   Artha
pid:       MI0026808
parent:    ath-MIR8178
paralog:   
locus:     4:18087205-18087442
matures:   ['UAACAGAGUAAUUGUACAGUG', 'CUGUACAAUUACUCUGUUAUA']
srr:       SRR9216049
genome:    /Users/jax/+Genomes/Plant_genomes/Artha.TAIR10_chr_all.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216049.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216049.cram 4:18087205-18087442

0 out of bounds
12 alignments
4 proper strand
3 stranded perfect matches

                                                                                     *************************                  *************************                                                                                     
UAUUGGAGUACAUAGGCCAGUUUAGAUUAAUUCUAUUUGUUCGGUUUAGUAUUGGUUAGAUCUUAUACCACACUUGUAUAUAACAGAGUAAUUGUACAGUGUAAUCAUUAGAACUUUCUCAUUCAUCUUAAUGAUUACACUGUACAAUUACUCUGUUAUAUACAAGUGUGGUAUAAGAUCUAACCAAUACUAAACCGAACAAAUAGAAUUAAUCUAAACCGGCCUAUGUACUCCAAUA
((((((((((((((((((.(((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((.............)).))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))).))))))))))))))))))
--------------------------------------------------------------------------------UAACAGAGUAAUUGUACAGUG----------------------------------------------------------------------------------------------------------------------------------------- l=21 a=0 c
-------------------------------------------------------------------------------------------------------------------------------------------CUGUACAAUUACUCUGUUAUA------------------------------------------------------------------------------ l=21 a=0 c*
----------------------------------------------------------------------------------------------------------------------------------AUGAUUACACUGUACAAUUACUC------------------------------------------------------------------------------------- l=23 a=1 ma
---------------------------------------------------------------------------------------GUAAUUGUACAGUGUAAUCAUUA-------------------------------------------------------------------------------------------------------------------------------- l=23 a=0 ma*

----------------------------------------------------------------------------------------------------------------------------------AUGAUUACACUGUACAAUUACUC------------------------------------------------------------------------------------- l=23 a=1 (ma)
------------------------------------------------------------------------------------------------------------------------------------GAUUACACUGUACAAUUACUCUGU---------------------------------------------------------------------------------- l=24 a=1 
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UAAACCGAACAAAUAGAAUUA--------------------------- l=21 a=1 
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------cAAACCGAACAAAUAGAAUUA--------------------------- l=21 a=1 

mb-01011
ax-1011011
ku-00
ss-110110011100
fn-001
